Association Analysis Between DNA Markers and Number of Functional Teats in Italian Large White Pigs


Gene name, symbol

Accession number: polymorphism

Chromosome, gene region, amino acid change

References

Cathepsin L, CTSL

AJ315771:g.5325  C > T

10, exon 5, silent

Fontanesi et al. (2010)

Erythropoietin receptor, EPOR

EU4077778:g.2373  C > T

2, intron 4

Vallet et al. (2005)

Estrogen receptor 2, ESR2

AF164957:c.949 G > A

1, exon 5, p.V317M

Muñoz et al. (2004)

Glutathione peroxidase 5, GPX5

AF124818:g.1939  C > T

7, 3′-UTR

Bertani et al. (1999)

Signal transducer and activator of transcription 5B, STAT5B

DQ144238:g.191A > G

12, intron 14

Ballester et al. (2006)




Table 30.2
Minor allele frequency (MAF) of the polymorphisms analyzed in the entire sample and in the two groups of sows based on their teat number




















































Genes
No. of analyzed sows
MAF – entire data set
MAF – Group 1 FTNUM = 14
MAF – Group 2 FTNUM >14
Allele frequency difference 1 vs. 2, P a

CTSL

1,086
0.18 (T)
0.18
0.19
0.7112

EPOR

1,027
0.18 (T)
0.17
0.19
0.1236

ESR2

1,094
0.40 (G)
0.40
0.41
0.5686

GPX5

940
0.36 (T)
0.34
0.40
0.0087

STAT5B

1,091
0.20 (G)
0.20
0.21

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Sep 17, 2016 | Posted by in GENERAL | Comments Off on Association Analysis Between DNA Markers and Number of Functional Teats in Italian Large White Pigs

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