Gene name, symbol
Accession number: polymorphism
Chromosome, gene region, amino acid change
References
Cathepsin L, CTSL
AJ315771:g.5325 C > T
10, exon 5, silent
Fontanesi et al. (2010)
Erythropoietin receptor, EPOR
EU4077778:g.2373 C > T
2, intron 4
Vallet et al. (2005)
Estrogen receptor 2, ESR2
AF164957:c.949 G > A
1, exon 5, p.V317M
Muñoz et al. (2004)
Glutathione peroxidase 5, GPX5
AF124818:g.1939 C > T
7, 3′-UTR
Bertani et al. (1999)
Signal transducer and activator of transcription 5B, STAT5B
DQ144238:g.191A > G
12, intron 14
Ballester et al. (2006)
Table 30.2
Minor allele frequency (MAF) of the polymorphisms analyzed in the entire sample and in the two groups of sows based on their teat number
|
Genes |
No. of analyzed sows |
MAF – entire data set |
MAF – Group 1 FTNUM = 14 |
MAF – Group 2 FTNUM >14 |
Allele frequency difference 1 vs. 2, P a |
|---|---|---|---|---|---|
|
CTSL |
1,086 |
0.18 (T) |
0.18 |
0.19 |
0.7112 |
|
EPOR |
1,027 |
0.18 (T) |
0.17 |
0.19 |
0.1236 |
|
ESR2 |
1,094 |
0.40 (G) |
0.40 |
0.41 |
0.5686 |
|
GPX5 |
940 |
0.36 (T) |
0.34 |
0.40 |
0.0087 |
|
STAT5B |
1,091 |
0.20 (G) |
0.20 |
0.21
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